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["Table S3  - Total Known miRNAs read Count"]
["miRids","AtECS1_Con","AtECS1_Inf","Col-0_Con","Col-0_Inf"]
["ath-miR156a-3p",24,3,17,0]
["ath-miR156b-3p",482,421,379,53]
["ath-miR156c-3p",226,79,146,8]
["ath-miR156d-3p",28,12,23,5]
["ath-miR156f-3p",1,0,0,0]
["ath-miR156h",3,1,2,0]
["ath-miR157a-3p",37,22,34,3]
["ath-miR157a-5p",63,4,23,1]
["ath-miR157b-3p",94,91,67,5]
["ath-miR157c-3p",260,46,221,3]
["ath-miR157c-5p",419,55,235,4]
["ath-miR157d",4,1,3,1]
["ath-miR159b-3p",1,0,2,0]
["ath-miR160b",0,0,0,1]
["ath-miR160c-3p",1,0,0,0]
["ath-miR160c-5p",0,8,1,1]
["ath-miR162a-3p",0,1,2,0]
["ath-miR162b-3p",2,2,7,1]
["ath-miR162b-5p",0,0,1,0]
["ath-miR163",173,69,27,28]
["ath-miR165a-3p",1,2,1,0]
["ath-miR165b",0,3,2,0]
["ath-miR166a-3p",1,0,4,0]
["ath-miR166a-5p",0,0,1,0]
["ath-miR166b-5p",1,0,0,0]
["ath-miR166c",2,0,0,0]
["ath-miR166d",1,1,0,0]
["ath-miR166e-3p",25,23,30,2]
["ath-miR167a-3p",2,0,5,1]
["ath-miR167a-5p",1,0,1,0]
["ath-miR167b",0,1,0,0]
["ath-miR167c-5p",0,0,1,0]
["ath-miR167d",2,0,0,0]
["ath-miR168a-3p",4,1,3,0]
["ath-miR168a-5p",0,0,2,0]
["ath-miR168b-5p",7,0,4,0]
["ath-miR169a-5p",0,4,1,0]
["ath-miR170-5p",1,0,0,0]
["ath-miR173-3p",70,9,50,3]
["ath-miR173-5p",188,15,51,0]
["ath-miR1886.3",1,0,4,0]
["ath-miR1888a",1,0,0,0]
["ath-miR2111b-3p",1,0,0,0]
["ath-miR2112-3p",0,0,1,0]
["ath-miR2112-5p",1,0,0,0]
["ath-miR2936",3,2,2,0]
["ath-miR2939",0,0,1,0]
["ath-miR3434-5p",0,0,1,0]
["ath-miR3440b-5p",2,0,0,0]
["ath-miR390a-5p",1,0,3,0]
["ath-miR390b-5p",0,0,2,0]
["ath-miR391-3p",1032,354,1082,51]
["ath-miR391-5p",96,15,41,4]
["ath-miR3932b-5p",43,50,67,4]
["ath-miR393b-3p",1,0,1,0]
["ath-miR396a-3p",0,0,1,0]
["ath-miR396a-5p",4,1,0,0]
["ath-miR398c-5p",1,0,0,0]
["ath-miR399c-3p",1,1,0,0]
["ath-miR399c-5p",8,0,5,0]
["ath-miR402",7,1,2,1]
["ath-miR408-3p",0,2,0,0]
["ath-miR4221",0,0,1,0]
["ath-miR4228-3p",15,16,26,8]
["ath-miR4228-5p",1,15,7,1]
["ath-miR447a-3p",30,10,23,0]
["ath-miR447a.2-3p",1,0,0,0]
["ath-miR447b",23,7,21,1]
["ath-miR447c-3p",0,1,0,0]
["ath-miR472-3p",379,464,492,132]
["ath-miR472-5p",21,2,14,1]
["ath-miR5014b",4,8,7,1]
["ath-miR5020a",0,1,0,0]
["ath-miR5020b",1,0,0,0]
["ath-miR5023",1,0,0,0]
["ath-miR5024-3p",3,1,2,0]
["ath-miR5024-5p",0,0,0,1]
["ath-miR5026",76,13,24,2]
["ath-miR5027",1,0,0,0]
["ath-miR5595a",2,2,0,0]
["ath-miR5633",1,0,0,0]
["ath-miR5635a",0,1,0,0]
["ath-miR5635b",3,0,0,0]
["ath-miR5635c",0,0,1,0]
["ath-miR5639-3p",0,1,0,0]
["ath-miR5642a",36,27,183,3]
["ath-miR5642b",42,22,236,6]
["ath-miR5644",2,3,2,0]
["ath-miR5645a",0,0,1,0]
["ath-miR5645b",0,1,1,0]
["ath-miR5645e",0,1,0,0]
["ath-miR5645f",1,7,7,4]
["ath-miR5651",2,0,1,0]
["ath-miR5652",19,0,5,2]
["ath-miR5653",0,2,3,0]
["ath-miR5654-3p",57,14,57,6]
["ath-miR5654-5p",14,13,12,1]
["ath-miR5657",1,0,0,0]
["ath-miR5659",1,0,0,0]
["ath-miR5661",0,0,1,0]
["ath-miR5663-5p",1,0,0,0]
["ath-miR5664",1,2,0,0]
["ath-miR5995b",6,3,1,0]
["ath-miR5996",11,0,7,1]
["ath-miR771",6,3,5,0]
["ath-miR773a",97,81,133,6]
["ath-miR773b-3p",3,2,2,1]
["ath-miR775",28,6,14,0]
["ath-miR779.1",1,2,0,0]
["ath-miR781b",1,0,0,0]
["ath-miR8121",8,1,2,0]
["ath-miR8166",1,0,0,0]
["ath-miR8167a",2,1,2,0]
["ath-miR8167c",1,0,0,0]
["ath-miR8167d",2,0,1,0]
["ath-miR8167e",1,0,1,0]
["ath-miR8167f",0,1,1,0]
["ath-miR8171",0,0,1,0]
["ath-miR8172",1,0,0,0]
["ath-miR8173",4,3,8,0]
["ath-miR8175",2,1,4,0]
["ath-miR8177",2,0,0,1]
["ath-miR8180",0,0,1,0]
["ath-miR8183",1,2,1,0]
["ath-miR822-3p",58,52,40,6]
["ath-miR822-5p",118,20,34,3]
["ath-miR823",12,4,14,0]
["ath-miR825",10,0,4,0]
["ath-miR826a",0,0,0,1]
["ath-miR827",1670,1440,1130,383]
["ath-miR831-3p",1,0,0,0]
["ath-miR833a-3p",1,0,1,0]
["ath-miR833a-5p",11,4,11,0]
["ath-miR833b",1,0,3,0]
["ath-miR837-3p",2,0,0,0]
["ath-miR838",1,0,0,0]
["ath-miR840-3p",31,4,8,0]
["ath-miR840-5p",9,1,0,0]
["ath-miR841a-3p",1,1,3,0]
["ath-miR841a-5p",8,7,10,1]
["ath-miR841b-3p",7,2,3,1]
["ath-miR841b-5p",11,15,12,1]
["ath-miR842",18,15,17,3]
["ath-miR843",6,0,2,0]
["ath-miR844-3p",5,0,1,0]
["ath-miR846-3p",2,0,0,0]
["ath-miR846-5p",8,0,2,0]
["ath-miR847",19,5,12,1]
["ath-miR848",27,16,30,4]
["ath-miR850",368,606,367,98]
["ath-miR851-5p",3,1,2,0]
["ath-miR852",11,1,5,0]
["ath-miR853",0,1,2,0]
["ath-miR858a",12,0,6,0]
["ath-miR858b",3,2,2,0]
["ath-miR859",1,0,0,0]
["ath-miR860",2,0,1,0]
["ath-miR861-3p",2,0,0,0]
["ath-miR861-5p",9,7,4,0]
["ath-miR863-3p",15,1,1,0]
["ath-miR863-5p",33,9,9,2]
["ath-miR865-5p",16,0,6,1]
["ath-miR866-3p",5,0,2,0]
["ath-miR866-5p",1,0,0,0]
["ath-miR870-3p",1,0,0,0]